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Imagej piv4/13/2024 Indicate the first and last slices in the range to remove, as. The PIVMat Toolbox for Matlab contains a set of command-line functions to import, post-process and analyse 2- and 3-components vector fields from PIV (particle image velocimetry), stereo-PIV, DIC (digital image correlation) SS (synthetic schlieren) or BOS (background-oriented schlieren) applications. Deleting a number of slices: Image Stacks Tools Slice remover. Deletes the currently displayed slice in a stack. Deleting a single slice: Image Stacks Delete Slice. Some of these functions are described below. I would also like to bring modern vision analysis tools to the biological research community especially the machine learning and deep learning methods.Īpart from research, during my 7+ years in the private sector, I have also built strong expertise in medical device regulatory standards and quality systems (ISO13485, FDA QSR, PIC/S GMP etc.), as well as product development in IVD and biomaterial implants. The slices in a stack can be manipulated in many ways. I am also proficient in statistical programming, machine learning and data visualization using R and Python.Īt CENTURI, I look forward to participating and helping people in imaging and data analysis related projects. The automatic detection of masks usually necessitates special features or reference points such as bright lines, high contrast objects, and. These data typically come in the form of a logical mask, generated manually or through automatic algorithms. The results are typically presented as a vector field, where movement vectors are plotted at regular intervals in the image. I am enthusiastic about prototyping and developing image processing algorithm for microscopy data (ImageJ/FIJI). The measurement of displacements near the vicinity of surfaces involves advanced PIV algorithms requiring accurate knowledge of object boundaries. Particle Image Velocimetry (PIV) is a way of quantifying speed and direction of movement occurring within video sequences. Afterward, I have been working on data mining, implementing machine learning pipeline and microfluidic imaging cytometer instrumentation in both academia and biotech industry. I have a PhD in biophysics focusing on analysis of cellular images, automatic microscopy and characterizing cell-cell / cell-ECM interaction within multicellular architecture.
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